Welcome to SynOmics documentation!
SynOmics is a Python library for synthetic and omics data analysis. It provides tools for generating synthetic transcriptomics and clinical data, analyzing gene expression, and integrating with bioinformatics workflows.
Note
This project is under active development.
Abstract
SynOmics is a comprehensive framework for generating and evaluating synthetic transciptomics data. The library consists of three main modules:
Processing Module: Preprocessing (imputation and scaling), Metadata tools, and Gene Query utilities
Synthesizers Module: Multiple state-of-the-art synthesis methods (CT-GAN, TVAE, Gaussian Copula, SynthPop, Avatars)
Evaluation Module: Comprehensive assessment tools for both utility and privacy preservation of synthetic data
Contents
User Guide
API Documentation